elf.segmentation

 1"""Graph-based instance segmentation based on clustering, (lifted) multicut, mutex watershed and more.
 2
 3Examples for graph-based segmentation with `elf.segmentation` can be found in [example/segmentation](https://github.com/constantinpape/elf/tree/master/example/segmentation) and for embedding-based segmentation in [example/embeddings](https://github.com/constantinpape/elf/tree/master/example/embeddings).
 4"""
 5
 6from .clustering import (agglomerative_clustering,
 7                         cluster_segmentation, cluster_segmentation_mala,
 8                         mala_clustering)
 9from .features import (compute_affinity_features, compute_boundary_features, compute_boundary_mean_and_length,
10                       compute_grid_graph, compute_grid_graph_affinity_features, compute_grid_graph_image_features,
11                       compute_rag, compute_region_features,
12                       project_node_labels_to_pixels)
13from .lifted_multicut import get_lifted_multicut_solver
14from .multicut import get_multicut_solver, compute_edge_costs
15from .watershed import distance_transform_watershed, stacked_watershed
16from .workflows import edge_training, multicut_segmentation, multicut_workflow, simple_multicut_workflow
17from .gasp import GaspFromAffinities, run_GASP